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BMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (BMDB) and the original publication (see below). We ask that users who download significant portions of the database cite the BMDB paper in any resulting publications.

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Protein/Gene Sequences (in FASTA Format)

Data SetReleased onProtein SequencesGene Sequences
All Metabolite Metabolizing Enzymes2020-04-17 Download | 703 KB Download | 962 KB

Structures (in SDF Format)

Data SetReleased onSDF FileFile Size
Metabolite Structures2020-04-17 Download18.4 MB

Metabolite and Protein Data (in XML format)

Data SetReleased onXML FileFile Size
All Metabolites2020-04-17 Download20.3 MB
All Proteins2020-04-17 Download2.66 MB


Data SetReleased onDownload LinkFile Size
Mass Spectra Image Files2020-04-29 Download153 MB
NMR Spectra FID Files2020-04-29 Download1.81 GB
Raw NMR Spectra Peaklist Files (TXT)2020-04-29 Download851 KB
Raw GC-MS Spectra Peaklist Files (TXT) - Predicted2020-04-29 Download3.96 MB
Raw MS-MS Spectra Peaklist Files (TXT) - Predicted2020-04-29 Download71.2 MB
Raw MS-MS Spectra Peaklist Files (TXT) - Experimental2020-04-29 Download1.73 MB
All Raw Spectra Peaklist Files (TXT)2020-04-29 Download98.5 MB
NMR Spectra Files (XML)2020-04-29 Download3.32 MB
GC-MS Spectra Files (XML) - Predicted2020-04-29 Download12.3 MB
GC-MS Spectra Files (XML) - Experimental2020-04-29 Download9.65 MB
MS-MS Spectra Files (XML) - Predicted2020-04-29 Download224 MB
MS-MS Spectra Files (XML) - Experimental2020-04-29 Download15.7 MB
All Spectra Files (XML)2020-04-29 Download547 MB