Record Information
Version1.0
Creation Date2016-09-30 23:09:01 UTC
Update Date2020-05-11 20:45:41 UTC
BMDB IDBMDB0004270
Secondary Accession Numbers
  • BMDB04270
Metabolite Identification
Common NameD-Glucosaminide
DescriptionD-Glucosaminide belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds. Based on a literature review a small amount of articles have been published on D-Glucosaminide.
Structure
Thumb
Synonyms
ValueSource
4,5-Dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-4-hydroxy-6-(hydroxymethyl)oxaHMDB
N-2-yl]Oxy-6-(hydroxymethyl)oxane-2,4-diolHMDB
Chemical FormulaC18H35N3O13
Average Molecular Weight501.4828
Monoisotopic Molecular Weight501.216988221
IUPAC Name(2R,3R,4R,5S,6R)-3-amino-5-{[(3R,4R,6R)-3-amino-5-{[(2S,3R,4R,5S,6R)-3-amino-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-4-hydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-6-(hydroxymethyl)oxane-2,4-diol
Traditional NameD-glucosaminide
CAS Registry Number78341-33-0
SMILES
N[C@H]1[C@H](O)O[C@H](CO)[C@@H](OC2O[C@H](CO)C(O[C@@H]3O[C@H](CO)[C@@H](O)[C@H](O)[C@H]3N)[C@H](O)[C@H]2N)[C@@H]1O
InChI Identifier
InChI=1S/C18H35N3O13/c19-7-12(27)14(5(2-23)30-16(7)29)33-18-9(21)13(28)15(6(3-24)32-18)34-17-8(20)11(26)10(25)4(1-22)31-17/h4-18,22-29H,1-3,19-21H2/t4-,5-,6-,7-,8-,9-,10-,11-,12-,13-,14-,15?,16-,17+,18?/m1/s1
InChI KeyRQFQJYYMBWVMQG-KAPKVSAKSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as oligosaccharides. These are carbohydrates made up of 3 to 10 monosaccharide units linked to each other through glycosidic bonds.
KingdomOrganic compounds
Super ClassOrganic oxygen compounds
ClassOrganooxygen compounds
Sub ClassCarbohydrates and carbohydrate conjugates
Direct ParentOligosaccharides
Alternative Parents
Substituents
  • Oligosaccharide
  • Aminoglycoside core
  • Glycosyl compound
  • O-glycosyl compound
  • Amino saccharide
  • Oxane
  • 1,2-aminoalcohol
  • Secondary alcohol
  • Hemiacetal
  • Organoheterocyclic compound
  • Acetal
  • Oxacycle
  • Primary amine
  • Hydrocarbon derivative
  • Primary aliphatic amine
  • Organonitrogen compound
  • Organopnictogen compound
  • Organic nitrogen compound
  • Amine
  • Alcohol
  • Primary alcohol
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cytoplasm
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-3ALOGPS
logP-6.8ChemAxon
logS-0.34ALOGPS
pKa (Strongest Acidic)11.71ChemAxon
pKa (Strongest Basic)8.87ChemAxon
Physiological Charge3ChemAxon
Hydrogen Acceptor Count16ChemAxon
Hydrogen Donor Count11ChemAxon
Polar Surface Area286.05 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity105.72 m³·mol⁻¹ChemAxon
Polarizability48.42 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen Locations
  • Platelet
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
PlateletExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
details
Abnormal Concentrations
Not Available
HMDB IDHMDB0004270
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023358
KNApSAcK IDNot Available
Chemspider ID389715
KEGG Compound IDC06023
BioCyc IDCPD-7177
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN ID7043
PubChem Compound440883
PDB IDNot Available
ChEBI ID35373
References
Synthesis ReferencePistia-Brueggeman, Gabriela; Hollingsworth, Rawle I. The use of the o-nitrophenyl group as a protecting/activating group for 2-acetamido-2-deoxyglucose. Carbohydrate Research (2003), 338(5), 455-458.
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available