Showing metabocard for 12,13-EpOME (BMDB0004702)

IdentificationTaxonomyPhysical propertiesPathwaysSpectraConcentrationsLinksReferencesXML
Record Information
Version1.0
Creation Date2016-09-30 23:10:26 UTC
Update Date2020-04-22 15:14:05 UTC
BMDB IDBMDB0004702
Secondary Accession Numbers
  • BMDB04702
Metabolite Identification
Common Name12,13-EpOME
Description12,13-EpOME, also known as vernolsaeure or vernolic acids, belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms. Thus, 12,13-epome is considered to be an octadecanoid lipid molecule. 12,13-EpOME is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
Thumb
MOLSDFPDBSMILESInChI
Synonyms
ValueSource
(9Z)-11-(3-Pentyloxiran-2-yl)undec-9-enoic acidsChEBI
(9Z)-12,13-Epoxyoctadecenoic acidChEBI
12(13)-EpOMEChEBI
12,13-cis-Epoxyoctadecenoic acidChEBI
12,13-Epoxy-9(Z)-octadecenoic acidChEBI
12,13-Epoxy-cis-9-octadecenoic acidChEBI
12,13-Monoepoxy-cis-9-octadecenoic acidChEBI
Acide vernoliqueChEBI
cis-12,13-Ep, 9C-18:1ChEBI
cis-12,13-Epoxy-9-octadecenoic acidChEBI
Vernolic acidsChEBI
VernolsaeureChEBI
VernolsaeurenChEBI
(9Z)-12,13-EpoxyoctadecenoateGenerator
12,13-cis-EpoxyoctadecenoateGenerator
12,13-Epoxy-9(Z)-octadecenoateGenerator
12,13-Epoxy-cis-9-octadecenoateGenerator
12,13-Monoepoxy-cis-9-octadecenoateGenerator
cis-12,13-Epoxy-9-octadecenoateGenerator
(+/-)-12(13)-epoxy-9Z-octadecenoateHMDB
(+/-)-12(13)-epoxy-9Z-octadecenoic acidHMDB
(9Z)-11-(3-Pentyloxiran-2-yl)undec-9-enoateHMDB
(9Z)-11-(3-Pentyloxiran-2-yl)undec-9-enoic acidHMDB
12,13-Epoxyoctadec-9(Z)-enoateHMDB
12,13-Epoxyoctadec-9(Z)-enoic acidHMDB
Vernolic acidHMDB
cis-12-Epoxyoctadeca-cis-9-enoateHMDB
cis-12-Epoxyoctadeca-cis-9-enoic acidHMDB
VernoleateHMDB
12,13-EOAHMDB
12,13-Epoxy-9-octadecenoic acidHMDB
VernolateHMDB
Chemical FormulaC18H32O3
Average Molecular Weight296.4449
Monoisotopic Molecular Weight296.23514489
IUPAC Name(9Z)-11-(3-pentyloxiran-2-yl)undec-9-enoic acid
Traditional Namevernolic acid
CAS Registry NumberNot Available
SMILES
CCCCCC1OC1C\C=C/CCCCCCCC(O)=O
InChI Identifier
InChI=1S/C18H32O3/c1-2-3-10-13-16-17(21-16)14-11-8-6-4-5-7-9-12-15-18(19)20/h8,11,16-17H,2-7,9-10,12-15H2,1H3,(H,19,20)/b11-8-
InChI KeyCCPPLLJZDQAOHD-FLIBITNWSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentLong-chain fatty acids
Alternative Parents
Substituents
  • Long-chain fatty acid
  • Epoxy fatty acid
  • Heterocyclic fatty acid
  • Unsaturated fatty acid
  • Carboxylic acid derivative
  • Carboxylic acid
  • Dialkyl ether
  • Oxirane
  • Ether
  • Monocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Oxacycle
  • Organic oxide
  • Hydrocarbon derivative
  • Carbonyl group
  • Organooxygen compound
  • Organic oxygen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Adiposome
  • Cell membrane
  • Cytoplasm
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.37ALOGPS
logP5.48ChemAxon
logS-5.8ALOGPS
pKa (Strongest Acidic)4.99ChemAxon
pKa (Strongest Basic)-4.2ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area49.83 ŲChemAxon
Rotatable Bond Count14ChemAxon
Refractivity86.92 m³·mol⁻¹ChemAxon
Polarizability37.2 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positivesplash10-05ng-8950000000-c5cd8bcc7660edd193bdView in MoNA
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (1 TMS) - 70eV, Positivesplash10-0abi-9461000000-ee542501a93901368313View in MoNA
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted GC-MSPredicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, PositiveNot AvailableView in JSpectraViewer
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-004i-0190000000-bdb34bd2906b9903a919View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-00a9-9850000000-f325928e52a1c0523bd8View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-052o-9400000000-73273401d57d3e2d0464View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0002-0090000000-a3e75e0d5c18ce62d0ddView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-002b-2190000000-783d4add45a350928417View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-052f-9300000000-ffe7b3e31523bb0ac1b4View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-01ta-1290000000-631162c6f408d7a2d2afView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-01u3-9560000000-6f948e2593086b41b4a4View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0a4l-9200000000-dcc600f15abbc5433cf6View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0002-0090000000-26dfdcdc9f7c4b699219View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-002b-0190000000-1c9cb366e25dc7cd47bdView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0006-9230000000-cc51121509a80b1828bcView in MoNA
Biological Properties
Cellular Locations
  • Adiposome
  • Cell membrane
  • Cytoplasm
  • Membrane
Biospecimen LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
HMDB IDHMDB0004702
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023414
KNApSAcK IDNot Available
Chemspider ID4512106
KEGG Compound IDC14826
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5356421
PDB IDNot Available
ChEBI ID38299
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available