Record Information
Version1.0
Creation Date2016-09-30 23:25:35 UTC
Update Date2020-04-22 15:18:27 UTC
BMDB IDBMDB0006755
Secondary Accession Numbers
  • BMDB06755
Metabolite Identification
Common Name3a,21-Dihydroxy-5b-pregnane-11,20-dione
Description3a,21-Dihydroxy-5b-pregnane-11,20-dione, also known as 3a,21-dihydroxy-5b-pregnane-11,20-dione, belongs to the class of organic compounds known as 21-hydroxysteroids. These are steroids carrying a hydroxyl group at the 21-position of the steroid backbone. Thus, 3a,21-dihydroxy-5b-pregnane-11,20-dione is considered to be a steroid lipid molecule. 3a,21-Dihydroxy-5b-pregnane-11,20-dione is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. 3a,21-Dihydroxy-5b-pregnane-11,20-dione participates in a number of enzymatic reactions, within cattle. In particular, 3a,21-Dihydroxy-5b-pregnane-11,20-dione can be biosynthesized from tetrahydrocorticosterone through its interaction with the enzyme corticosteroid 11-beta-dehydrogenase isozyme 1. In addition, 3a,21-Dihydroxy-5b-pregnane-11,20-dione can be converted into 21-hydroxy-5b-pregnane-3,11,20-trione; which is catalyzed by the enzyme aldo-keto reductase family 1 member C4. In cattle, 3a,21-dihydroxy-5b-pregnane-11,20-dione is involved in the metabolic pathway called the steroidogenesis pathway.
Structure
Thumb
Synonyms
ValueSource
3alpha,21-Dihydroxy-5beta-pregnane-11,20-dioneHMDB
5beta-Pregnane-3alpha,21-diol-11,20-dioneHMDB
Chemical FormulaC21H32O4
Average Molecular Weight348.4764
Monoisotopic Molecular Weight348.230059512
IUPAC Name(1S,2S,5R,7R,10S,11S,15S)-5-hydroxy-14-(2-hydroxyacetyl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-17-one
Traditional Name(1S,2S,5R,7R,10S,11S,15S)-5-hydroxy-14-(2-hydroxyacetyl)-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-17-one
CAS Registry Number566-03-0
SMILES
[H][C@@]12CCC(C(=O)CO)[C@@]1(C)CC(=O)[C@@]1([H])[C@@]2([H])CC[C@]2([H])C[C@H](O)CC[C@]12C
InChI Identifier
InChI=1S/C21H32O4/c1-20-8-7-13(23)9-12(20)3-4-14-15-5-6-16(18(25)11-22)21(15,2)10-17(24)19(14)20/h12-16,19,22-23H,3-11H2,1-2H3/t12-,13-,14+,15+,16?,19-,20+,21+/m1/s1
InChI KeyXWYBFXIUISNTQG-XPYNSANSSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as 21-hydroxysteroids. These are steroids carrying a hydroxyl group at the 21-position of the steroid backbone.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassHydroxysteroids
Direct Parent21-hydroxysteroids
Alternative Parents
Substituents
  • Progestogin-skeleton
  • 21-hydroxysteroid
  • 20-oxosteroid
  • Pregnane-skeleton
  • 3-hydroxysteroid
  • 11-oxosteroid
  • Oxosteroid
  • 3-alpha-hydroxysteroid
  • Cyclic alcohol
  • Alpha-hydroxy ketone
  • Ketone
  • Secondary alcohol
  • Alcohol
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxide
  • Organic oxygen compound
  • Carbonyl group
  • Primary alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
  • C21 steroids (gluco/mineralocorticoids, progestogins) and derivatives (LMST02030199 )
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Cytoplasm
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP2.56ALOGPS
logP2.25ChemAxon
logS-3.7ALOGPS
pKa (Strongest Acidic)13.86ChemAxon
pKa (Strongest Basic)-1.4ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area74.6 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity95.28 m³·mol⁻¹ChemAxon
Polarizability39.15 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Biological Properties
Cellular Locations
  • Cell membrane
  • Cytoplasm
  • Membrane
Biospecimen LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
HMDB IDHMDB0006755
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB024059
KNApSAcK IDNot Available
Chemspider ID24850110
KEGG Compound IDC05478
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44263347
PDB IDNot Available
ChEBI IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available