Showing metabocard for Hydrogen selenide (BMDB0011110)

IdentificationTaxonomyPhysical propertiesPathwaysSpectraConcentrationsLinksReferencesenzymes (2) Show 2 proteinsXML
Record Information
Version1.0
Creation Date2016-10-03 18:12:57 UTC
Update Date2020-05-21 16:26:51 UTC
BMDB IDBMDB0011110
Secondary Accession Numbers
  • BMDB11110
Metabolite Identification
Common NameHydrogen selenide
DescriptionHydrogen hydrogen selenide, also known as hydrogen selenide or Hydrogen hydrogen selenide, belongs to the class of inorganic compounds known as homogeneous other non-metal compounds. These are inorganic non-metallic compounds in which the largest atom belongs to the class of 'other non-metals'. Hydrogen hydrogen selenide is a drug. Hydrogen hydrogen selenide exists as a solid, possibly soluble (in water), and possibly neutral molecule. Hydrogen hydrogen selenide exists in all living organisms, ranging from bacteria to humans. Hydrogen hydrogen selenide participates in a number of enzymatic reactions, within cattle. In particular, L-Alanine and hydrogen hydrogen selenide can be biosynthesized from selenocysteine through its interaction with the enzyme selenocysteine lyase. In addition, Hydrogen hydrogen selenide can be converted into phosphoroselenoic acid through its interaction with the enzyme hydrogen selenide, water dikinase 2. In cattle, hydrogen hydrogen selenide is involved in the metabolic pathway called the selenoamino acid metabolism pathway. Hydrogen hydrogen selenide is a potentially toxic compound.
Structure
Thumb
MOLSDFPDBSMILESInChI
Synonyms
ValueSource
SelenideKegg
[SeH2]ChEBI
H2SeChEBI
Hydroselenic acidChEBI
HydroselenateGenerator
Dihydrogen monoselenideHMDB
Dihydrogen selenideHMDB
SelaneHMDB, MeSH
Selenium dihydrideHMDB
Selenium hydrideHMDB
Selenium hydride (seh2)HMDB
Hydrogen selenide, 75Se-labeledMeSH
Chemical FormulaH2Se
Average Molecular Weight80.98
Monoisotopic Molecular Weight81.932171892
IUPAC Namehydrogen selenide
Traditional Namehydrogen selenide
CAS Registry Number7783-07-5
SMILES
[SeH2]
InChI Identifier
InChI=1S/H2Se/h1H2
InChI KeySPVXKVOXSXTJOY-UHFFFAOYSA-N
Chemical Taxonomy
Description belongs to the class of inorganic compounds known as homogeneous other non-metal compounds. These are inorganic non-metallic compounds in which the largest atom belongs to the class of 'other non-metals'.
KingdomInorganic compounds
Super ClassHomogeneous non-metal compounds
ClassHomogeneous other non-metal compounds
Sub ClassNot Available
Direct ParentHomogeneous other non-metal compounds
Alternative Parents
Substituents
  • Homogeneous other non metal
  • Inorganic selenide
Molecular FrameworkNot Available
External Descriptors
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locationsNot Available
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.5ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity14.71 m³·mol⁻¹ChemAxon
Polarizability2.81 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-001i-9000000000-d9ac578ecd68e91829fbView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-001i-9000000000-d9ac578ecd68e91829fbView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-001i-9000000000-d9ac578ecd68e91829fbView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-001i-9000000000-b0759ba90e57e47d8446View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-001i-9000000000-b0759ba90e57e47d8446View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-001i-9000000000-b0759ba90e57e47d8446View in MoNA
1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)Not AvailableView in JSpectraViewer
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
HMDB IDHMDB0011110
DrugBank IDDBMET01458
Phenol Explorer Compound IDNot Available
FooDB IDFDB027892
KNApSAcK IDNot Available
Chemspider ID518
KEGG Compound IDC01528
BioCyc IDCPD-678
BiGG IDNot Available
Wikipedia LinkHydrogen selenide
METLIN IDNot Available
PubChem Compound533
PDB IDSE
ChEBI ID16503
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Enzymes

Enzyme Details
1. Selenocysteine lyase
General function:
Amino acid transport and metabolism
Specific function:
Catalyzes the decomposition of L-selenocysteine to L-alanine and elemental selenium.
Gene Name:
SCLY
Uniprot ID:
A2VDS1
Molecular weight:
47204.0
Reactions
Selenocysteine → L-Alanine + Hydrogen selenidedetails
Enzyme Details
2. Selenide, water dikinase 1
General function:
Amino acid transport and metabolism
Specific function:
Synthesizes selenophosphate from selenide and ATP.
Gene Name:
SEPHS1
Uniprot ID:
Q0VC82
Molecular weight:
42881.0
Reactions
Adenosine triphosphate + Hydrogen selenide + Water → Adenosine monophosphate + Phosphoroselenoic acid + Hydrogen phosphatedetails