Record Information
Version1.0
Creation Date2016-10-03 18:14:56 UTC
Update Date2020-05-11 19:14:22 UTC
BMDB IDBMDB0011230
Secondary Accession Numbers
  • BMDB11230
Metabolite Identification
Common NamePC(P-16:0/24:0)
DescriptionPC(P-16:0/24:0) is a phosphatidylchloline (PC). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylcholines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PC(P-16:0/24:0), in particular, consists of one 1Z-hexadecenyl chain to the C-1 atom, and one tetracosanoyl to the C-2 atom. In E. coli, PCs can be found in the integral component of the cell outer membrane. They are hydrolyzed by Phospholipases to a 2-acylglycerophosphocholine and a carboxylate.
Structure
Thumb
Synonyms
ValueSource
1-(1-Enyl-palmitoyl)-2-lignoceroyl-sn-glycero-3-phosphocholineHMDB
Gpcho(16:0/24:0)HMDB
Gpcho(40:0)HMDB
1-(1Z-Hexadecenyl)-2-lignoceroyl-GPCHMDB
1-(1Z-Hexadecenyl)-2-lignoceroyl-sn-glycero-3-phosphocholineHMDB
1-(1Z-Hexadecenyl)-2-lignoceroyl-sn-glycero-phosphatidylcholineHMDB
GPC(16:1/24:0)HMDB
GPC(40:1)HMDB
GPC(O-16:1(1Z)/24:0)HMDB
GPC(p-16:0/24:0)HMDB
GPCho(16:1/24:0)HMDB
GPCho(40:1)HMDB
GPCho(O-16:1(1Z)/24:0)HMDB
GPCho(p-16:0/24:0)HMDB
PC(16:1/24:0)HMDB
PC(40:1)HMDB
PC(O-16:1(1Z)/24:0)HMDB
Phosphatidylcholine(16:1/24:0)HMDB
Phosphatidylcholine(40:1)HMDB
Phosphatidylcholine(O-16:1(1Z)/24:0)HMDB
Phosphatidylcholine(p-16:0/24:0)HMDB
Chemical FormulaC48H96NO7P
Average Molecular Weight830.2521
Monoisotopic Molecular Weight829.692440943
IUPAC Name[2-({3-[(1Z)-hexadec-1-en-1-yloxy]-2-(tetracosanoyloxy)propyl phosphonato}oxy)ethyl]trimethylazanium
Traditional Name[2-({3-[(1Z)-hexadec-1-en-1-yloxy]-2-(tetracosanoyloxy)propyl phosphonato}oxy)ethyl]trimethylazanium
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCCCCCCCCCC(=O)OC(CO\C=C/CCCCCCCCCCCCCC)COP([O-])(=O)OCC[N+](C)(C)C
InChI Identifier
InChI=1S/C48H96NO7P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-28-29-31-33-35-37-39-41-48(50)56-47(46-55-57(51,52)54-44-42-49(3,4)5)45-53-43-40-38-36-34-32-30-21-19-17-15-13-11-9-7-2/h40,43,47H,6-39,41-42,44-46H2,1-5H3/b43-40-
InChI KeyGADWRGZCWDFELP-SATDTQGDSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as 1-(1z-alkenyl),2-acyl-glycerophosphocholines. These are glycerophosphocholines that carry exactly one acyl chain attached to the glycerol moiety through an ester linkage at the O2-position, and one 1Z-alkenyl chain attached through an ether linkage at the O1-position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct Parent1-(1Z-alkenyl),2-acyl-glycerophosphocholines
Alternative Parents
Substituents
  • 1-(1z-alkenyl),2-acyl-glycerophosphocholine
  • Phosphocholine
  • Glycerol vinyl ether
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Amine
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic salt
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.76ALOGPS
logP12.06ChemAxon
logS-7.7ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-4.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area94.12 ŲChemAxon
Rotatable Bond Count47ChemAxon
Refractivity253.01 m³·mol⁻¹ChemAxon
Polarizability107.08 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-03di-0000000090-2999ef61b45d0dcda51bView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-03di-0000000090-2999ef61b45d0dcda51bView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-03di-0004920170-d24b47e4e1a8b9906f91View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-004i-0000000090-54c43337d7f5e6d2b9f1View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-004i-0003002390-eacbd100e26fbd06d13cView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-016u-2009000000-a4350781f179c2da34ddView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-001i-0000000090-637ace8ab9ffcf7834d0View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-001i-0900000050-27e82024bd302ca3b303View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-001i-1900331690-bb703922710ebf3697e3View in MoNA
Biological Properties
Cellular Locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Biospecimen Locations
  • All Tissues
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
All TissuesExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
details
Abnormal Concentrations
Not Available
HMDB IDHMDB0011230
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB027985
KNApSAcK IDNot Available
Chemspider ID24767505
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53480701
PDB IDNot Available
ChEBI IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available