Showing metabocard for PC(P-18:1(9Z)/20:4(8Z,11Z,14Z,17Z)) (BMDB0011320)

IdentificationTaxonomyPhysical propertiesPathwaysSpectraConcentrationsLinksReferencesXML
Record Information
Version1.0
Creation Date2016-10-03 18:16:29 UTC
Update Date2020-06-04 19:35:30 UTC
BMDB IDBMDB0011320
Secondary Accession Numbers
  • BMDB11320
Metabolite Identification
Common NamePC(P-18:1(9Z)/20:4(8Z,11Z,14Z,17Z))
DescriptionPC(P-18:1(9Z)/20:4(8Z,11Z,14Z,17Z)) is a phosphatidylchloline (PC). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylcholines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PC(P-18:1(9Z)/20:4(8Z,11Z,14Z,17Z)), in particular, consists of one 1Z,9Z-octadecadienyl chain to the C-1 atom, and one 8Z,11Z,14Z,17Z-eicosapentaenoyl to the C-2 atom. In E. coli, PCs can be found in the integral component of the cell outer membrane. They are hydrolyzed by Phospholipases to a 2-acylglycerophosphocholine and a carboxylate.
Structure
Thumb
MOLSDFPDBSMILESInChI
Synonyms
ValueSource
1-(1-Enyl-oleoyl)-2-eicsoateHMDB
1-(1-Enyl-oleoyl)-2-eicsoatetraenoyl-sn-glycero-3-phosphocholineHMDB
1-(1-Enyl-oleoyl)-2-eicsoic acidHMDB
Gpcho(18:1/20:4)HMDB
Gpcho(18:1n9/20:4n3)HMDB
Gpcho(18:1W9/20:4W3)HMDB
Gpcho(38:5)HMDB
1-(1Z,9Z-Octadecadienyl)-2-eicosatetraenoyl-GPCHMDB
1-(1Z,9Z-Octadecadienyl)-2-eicosatetraenoyl-sn-glycero-3-phosphocholineHMDB
1-(1Z,9Z-Octadecadienyl)-2-eicosatetraenoyl-sn-glycero-phosphatidylcholineHMDB
GPC(18:2/20:4)HMDB
GPC(38:6)HMDB
GPC(O-18:2(1Z,9Z)/20:4(8Z,11Z,14Z,17Z))HMDB
GPC(O-18:2(1Z,9Z)/20:4n3)HMDB
GPC(O-18:2(1Z,9Z)/20:4W3)HMDB
GPC(p-18:1(9Z)/20:4(8Z,11Z,14Z,17Z))HMDB
GPC(p-18:1(9Z)/20:4n3)HMDB
GPC(p-18:1(9Z)/20:4W3)HMDB
GPCho(18:2/20:4)HMDB
GPCho(38:6)HMDB
GPCho(O-18:2(1Z,9Z)/20:4(8Z,11Z,14Z,17Z))HMDB
GPCho(O-18:2(1Z,9Z)/20:4n3)HMDB
GPCho(O-18:2(1Z,9Z)/20:4W3)HMDB
GPCho(p-18:1(9Z)/20:4(8Z,11Z,14Z,17Z))HMDB
GPCho(p-18:1(9Z)/20:4n3)HMDB
GPCho(p-18:1(9Z)/20:4W3)HMDB
PC(18:2/20:4)HMDB
PC(38:6)HMDB
PC(O-18:2(1Z,9Z)/20:4(8Z,11Z,14Z,17Z))HMDB
PC(O-18:2(1Z,9Z)/20:4n3)HMDB
PC(O-18:2(1Z,9Z)/20:4W3)HMDB
PC(p-18:1(9Z)/20:4n3)HMDB
PC(p-18:1(9Z)/20:4W3)HMDB
Phosphatidylcholine(18:2/20:4)HMDB
Phosphatidylcholine(38:6)HMDB
Phosphatidylcholine(O-18:2(1Z,9Z)/20:4(8Z,11Z,14Z,17Z))HMDB
Phosphatidylcholine(O-18:2(1Z,9Z)/20:4n3)HMDB
Phosphatidylcholine(O-18:2(1Z,9Z)/20:4W3)HMDB
Phosphatidylcholine(p-18:1(9Z)/20:4(8Z,11Z,14Z,17Z))HMDB
Phosphatidylcholine(p-18:1(9Z)/20:4n3)HMDB
Phosphatidylcholine(p-18:1(9Z)/20:4W3)HMDB
Chemical FormulaC46H82NO7P
Average Molecular Weight792.1195
Monoisotopic Molecular Weight791.582890495
IUPAC Name(2-{[(2R)-2-[(8Z,11Z,14Z,17Z)-icosa-8,11,14,17-tetraenoyloxy]-3-[(1Z,9Z)-octadeca-1,9-dien-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium
Traditional Name(2-{[(2R)-2-[(8Z,11Z,14Z,17Z)-icosa-8,11,14,17-tetraenoyloxy]-3-[(1Z,9Z)-octadeca-1,9-dien-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium
CAS Registry NumberNot Available
SMILES
CCCCCCCC\C=C/CCCCCC\C=C/OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCC\C=C/C\C=C/C\C=C/C\C=C/CC
InChI Identifier
InChI=1S/C46H82NO7P/c1-6-8-10-12-14-16-18-20-22-24-25-27-29-31-33-35-37-39-46(48)54-45(44-53-55(49,50)52-42-40-47(3,4)5)43-51-41-38-36-34-32-30-28-26-23-21-19-17-15-13-11-9-7-2/h8,10,14,16,20-23,25,27,38,41,45H,6-7,9,11-13,15,17-19,24,26,28-37,39-40,42-44H2,1-5H3/b10-8-,16-14-,22-20-,23-21-,27-25-,41-38-/t45-/m1/s1
InChI KeyKMIAOCFPRZDKBX-NDLZGGRQSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as 1-(1z-alkenyl),2-acyl-glycerophosphocholines. These are glycerophosphocholines that carry exactly one acyl chain attached to the glycerol moiety through an ester linkage at the O2-position, and one 1Z-alkenyl chain attached through an ether linkage at the O1-position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct Parent1-(1Z-alkenyl),2-acyl-glycerophosphocholines
Alternative Parents
Substituents
  • 1-(1z-alkenyl),2-acyl-glycerophosphocholine
  • Phosphocholine
  • Glycerol vinyl ether
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Amine
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic salt
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.28ALOGPS
logP9.36ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-4.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area94.12 ŲChemAxon
Rotatable Bond Count40ChemAxon
Refractivity249.39 m³·mol⁻¹ChemAxon
Polarizability96.24 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0f6x-0075000900-dc4b3cd94bf6471edec8View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-00kr-1091101300-944015b89de7d9f52b04View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0v09-5093100000-4267ee4fe573a450a72aView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0006-0000000900-2ade56e2a80dd485d72eView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-0006-0021010900-9e917019b7c711cc3931View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0udi-7197300000-1466b564e37473f1c7c8View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-004i-0000000090-27744d517906f5788128View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-004i-0000000090-27744d517906f5788128View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0fi3-0004920710-5594caa82b54f769e5a0View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-000i-9152212400-59ae5b2c37aca3756e6dView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-052s-4293012100-0d7857a084b85c3c80ecView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-059i-9075022100-b2d4bfda9b5e533e3731View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-0006-0000000900-538616e328f4298e1b7aView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-001l-0900000500-fdd64fda260629231e7eView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-001l-0500110900-ffdbc64efeef4acc3986View in MoNA
Biological Properties
Cellular Locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Biospecimen Locations
  • All Tissues
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
All TissuesExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
 details
Abnormal Concentrations
Not Available
HMDB IDHMDB0011320
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB028063
KNApSAcK IDNot Available
Chemspider ID24767595
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53480823
PDB IDNot Available
ChEBI ID89468
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available