You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on Bovine Metabolome Database.
Record Information |
---|
Version | 1.0 |
---|
Creation Date | 2016-09-30 22:18:27 UTC |
---|
Update Date | 2020-05-21 16:27:11 UTC |
---|
BMDB ID | BMDB0000014 |
---|
Secondary Accession Numbers | |
---|
Metabolite Identification |
---|
Common Name | Deoxycytidine |
---|
Description | 2'-Deoxycytidine, also known as dC, belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleosides. Pyrimidine 2'-deoxyribonucleosides are compounds consisting of a pyrimidine linked to a ribose which lacks a hydroxyl group at position 2. 2'-Deoxycytidine exists as a solid, possibly soluble (in water), and an extremely weak basic (essentially neutral) compound (based on its pKa) molecule. 2'-Deoxycytidine exists in all living species, ranging from bacteria to humans. |
---|
Structure | |
---|
Synonyms | Value | Source |
---|
4-Amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidin-2(1H)-one | ChEBI | dC | ChEBI | DCYD | ChEBI | 2'-Deoxycytidine | Kegg | 1-(2-Deoxy-b-D-ribofuranosyl)cytosine | HMDB | 1-(2-Deoxy-beta-D-erythro-pentofuranosyl)-cytosine | HMDB | 1-(2-Deoxy-beta-D-ribofuranosyl)cytosine | HMDB | 1-(2-Deoxy-beta-delta-erythro-pentofuranosyl)-cytosine | HMDB | 1-(2-Deoxy-beta-delta-ribofuranosyl)cytosine | HMDB | 2-Deoxy-cytidine | HMDB | 4-Amino-1-(2-deoxy-b-D-erythro-pentofuranosyl)-2(1H)-pyrimidinone | HMDB | 4-Amino-1-(2-deoxy-beta-D-erythro-pentofuranosyl)-2(1H)-pyrimidinone | HMDB | 4-Amino-1-(2-deoxy-beta-delta-erythro-pentofuranosyl)-2(1H)-pyrimidinone | HMDB | Cytosine deoxyribonucleoside | HMDB | Cytosine deoxyriboside | HMDB | Deoxy-cytidine | HMDB | Deoxyribose cytidine | HMDB | Desoxycytidine | HMDB | Deoxyribonucleoside, cytosine | HMDB | Deoxyriboside, cytosine | HMDB | Deoxycytidine | ChEBI |
|
---|
Chemical Formula | C9H13N3O4 |
---|
Average Molecular Weight | 227.2172 |
---|
Monoisotopic Molecular Weight | 227.090605919 |
---|
IUPAC Name | Not Available |
---|
Traditional Name | Not Available |
---|
CAS Registry Number | 951-77-9 |
---|
SMILES | Not Available |
---|
InChI Identifier | InChI=1S/C9H13N3O4/c10-7-1-2-12(9(15)11-7)8-3-5(14)6(4-13)16-8/h1-2,5-6,8,13-14H,3-4H2,(H2,10,11,15)/t5-,6+,8+/m0/s1 |
---|
InChI Key | CKTSBUTUHBMZGZ-SHYZEUOFSA-N |
---|
Chemical Taxonomy |
---|
Description | belongs to the class of organic compounds known as pyrimidine 2'-deoxyribonucleosides. Pyrimidine 2'-deoxyribonucleosides are compounds consisting of a pyrimidine linked to a ribose which lacks a hydroxyl group at position 2. |
---|
Kingdom | Organic compounds |
---|
Super Class | Nucleosides, nucleotides, and analogues |
---|
Class | Pyrimidine nucleosides |
---|
Sub Class | Pyrimidine 2'-deoxyribonucleosides |
---|
Direct Parent | Pyrimidine 2'-deoxyribonucleosides |
---|
Alternative Parents | |
---|
Substituents | - Pyrimidine 2'-deoxyribonucleoside
- Aminopyrimidine
- Pyrimidone
- Hydropyrimidine
- Pyrimidine
- Imidolactam
- Heteroaromatic compound
- Tetrahydrofuran
- Secondary alcohol
- Azacycle
- Oxacycle
- Organoheterocyclic compound
- Alcohol
- Hydrocarbon derivative
- Organic oxide
- Organopnictogen compound
- Primary amine
- Primary alcohol
- Organooxygen compound
- Organonitrogen compound
- Organic oxygen compound
- Organic nitrogen compound
- Amine
- Aromatic heteromonocyclic compound
|
---|
Molecular Framework | Aromatic heteromonocyclic compounds |
---|
External Descriptors | |
---|
Ontology |
---|
Status | Detected but not Quantified |
---|
Origin | |
---|
Biofunction | Not Available |
---|
Application | Not Available |
---|
Cellular locations | - Cytoplasm
- Lysosome
- Mitochondria
- Nucleus
|
---|
Physical Properties |
---|
State | Solid |
---|
Experimental Properties | Property | Value | Reference |
---|
Melting Point | 207 - 210 °C | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | 870 mg/mL | Not Available | LogP | -1.77 | HANSCH,C ET AL. (1995) |
|
---|
Predicted Properties | Not Available |
---|
Spectra |
---|
Spectra | |
---|
Biological Properties |
---|
Cellular Locations | - Cytoplasm
- Lysosome
- Mitochondria
- Nucleus
|
---|
Biospecimen Locations | |
---|
Pathways | |
---|
Normal Concentrations |
---|
| |
All Tissues | Expected but not Quantified | Not Quantified | Not Specified | Not Specified | Normal | | details | Liver | Detected but not Quantified | Not Quantified | Not Specified | Not Specified | Normal | | details | Milk | Detected but not Quantified | Not Quantified | Not Specified | Not Specified | Normal | | details |
|
---|
Abnormal Concentrations |
---|
| Not Available |
---|
External Links |
---|
HMDB ID | HMDB0000014 |
---|
DrugBank ID | DB02594 |
---|
Phenol Explorer Compound ID | Not Available |
---|
FooDB ID | FDB021871 |
---|
KNApSAcK ID | Not Available |
---|
Chemspider ID | 13117 |
---|
KEGG Compound ID | C00881 |
---|
BioCyc ID | DEOXYCYTIDINE |
---|
BiGG ID | 36280 |
---|
Wikipedia Link | Deoxycytidine |
---|
METLIN ID | 3367 |
---|
PubChem Compound | 13711 |
---|
PDB ID | Not Available |
---|
ChEBI ID | 15698 |
---|
References |
---|
Synthesis Reference | Fox, Jack F.; Yung, Naishun; Wempen, Iris; Hoffer, Max. Pyrimidine nucleosides. XII. Direct synthesis of 2'-deoxycytidine and its a-anomer. Journal of the American Chemical Society (1961), 83 4066-50. |
---|
Material Safety Data Sheet (MSDS) | Not Available |
---|
General References | - Pan L, Yu J, Mi Z, Mo L, Jin H, Yao C, Ren D, Menghe B: A Metabolomics Approach Uncovers Differences between Traditional and Commercial Dairy Products in Buryatia (Russian Federation). Molecules. 2018 Mar 22;23(4). pii: molecules23040735. doi: 10.3390/molecules23040735. [PubMed:29565828 ]
|
---|